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Added singularity module

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ameynert 2021-03-04 14:46:23 +00:00 committed by GitHub
parent 3af2c6409f
commit 6f09a233f0
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1 changed files with 16 additions and 3 deletions
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19
conf/eddie.config
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@ -5,7 +5,13 @@ params {
config_profile_url = 'https://www.ed.ac.uk/information-services/research-support/research-computing/ecdf/high-performance-computing'
}
conda.createTimeout = '2h'
conda {
createTimeout = '2h'
}
singularity {
enabled = true
}
process {
executor = 'sge'
@ -19,12 +25,19 @@ process {
maxErrors = '-1'
maxRetries = 3
# load module script for Anaconda
# load module script for Anaconda and Singularity
beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' }
module = 'anaconda/5.3.1'
module = 'singularity/3.5.3'
}
params {
saveReference = true
// illumina iGenomes reference file paths on GIS Aquila
// iGenomes reference base
igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes/'
max_memory = 384.GB
max_cpus = 32
max_time = 240.h
}