Added singularity module

conf/eddie.config

@@ -5,7 +5,13 @@ params {
   config_profile_url = 'https://www.ed.ac.uk/information-services/research-support/research-computing/ecdf/high-performance-computing'
 }
 
-conda.createTimeout = '2h'
+conda {
+  createTimeout = '2h'
+}
+
+singularity {
+  enabled = true
+}
 
 process {
   executor = 'sge'
@@ -19,12 +25,19 @@ process {
   maxErrors = '-1'
   maxRetries = 3
 
-  # load module script for Anaconda
+  # load module script for Anaconda and Singularity
   beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' }
   module = 'anaconda/5.3.1'
+  module = 'singularity/3.5.3'
 }
+
 params {
   saveReference = true
-  // illumina iGenomes reference file paths on GIS Aquila
+
+  // iGenomes reference base
   igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes/'
+
+  max_memory = 384.GB
+  max_cpus = 32
+  max_time = 240.h
 }