From 70b5205d153f4313bdf586837d0eb81e8b5f2607 Mon Sep 17 00:00:00 2001 From: Olga Botvinnik Date: Thu, 27 Jun 2019 15:02:47 -0700 Subject: [PATCH] Add human salmon index and mouse star index --- conf/czbiohub_aws.config | 2 ++ 1 file changed, 2 insertions(+) diff --git a/conf/czbiohub_aws.config b/conf/czbiohub_aws.config index a89588b..bd0228d 100644 --- a/conf/czbiohub_aws.config +++ b/conf/czbiohub_aws.config @@ -68,11 +68,13 @@ params { gtf = "${params.gencode_base}/human/v30/gencode.v30.annotation.ERCC92.gtf" transcript_fasta = "${params.gencode_base}/human/v30/gencode.v30.transcripts.ERCC92.fa" star = "${params.gencode_base}/human/v30/STARIndex/" + salmon_index = "${params.gencode_base}/human/v30/salmon_index/" } 'GRCm38' { fasta = "${params.gencode_base}/mouse/vM21/GRCm38.p6.genome.ERCC92.fa" gtf = "${params.gencode_base}/mouse/vM21/gencode.vM21.annotation.ERCC92.gtf" transcript_fasta = "${params.gencode_base}/mouse/vM21/gencode.vM21.transcripts.ERCC92.fa" + start = "${params.gencode_base}/mouse/vM21/STARIndex/" } }