diff --git a/conf/shh.config b/conf/shh.config index dc51e87..ab3dcca 100644 --- a/conf/shh.config +++ b/conf/shh.config @@ -10,6 +10,7 @@ params { igenomes_base = "/projects1/public_data/igenomes/" } +// Preform work directory cleanup after a successful run cleanup = true singularity { @@ -46,4 +47,8 @@ profiles { queue = { task.memory > 756.GB || task.cpus > 64 ? 'supercruncher': task.time <= 2.h ? 'short' : task.time <= 48.h ? 'medium': 'long' } } } + // Profile to deactivate automatic cleanup of work directory after a successful run. Overwrites cleanup option. + debug { + cleanup = false + } }