diff --git a/conf/awsbatch.config b/conf/awsbatch.config index 2e5f83c..a8b61b8 100644 --- a/conf/awsbatch.config +++ b/conf/awsbatch.config @@ -7,10 +7,22 @@ params { awsqueue = false awsregion = 'eu-west-1' awscli = '/home/ec2-user/miniconda/bin/aws' - tracedir = './' +} + +timeline { + overwrite = true +} +report { + overwrite = true +} +trace { + overwrite = true +} +dag { + overwrite = true } process.executor = 'awsbatch' process.queue = params.awsqueue aws.region = params.awsregion -executor.awscli = params.awscli +aws.batch.cliPath = params.awscli diff --git a/docs/awsbatch.md b/docs/awsbatch.md index c00acef..daf425b 100644 --- a/docs/awsbatch.md +++ b/docs/awsbatch.md @@ -1,4 +1,6 @@ # nf-core/configs: awsbatch Configuration To be used with `awsbatch`. -Custom queue, region and CLI path can be supplied with `params.awsqueue`, `params.awsregion`, `params.awscli`, respectively. +Custom queue and region can be supplied with `params.awsqueue`, `params.awsregion`, `params.awscli`, respectively. + +Allow `overwrite` of `trace`, `timeline`, `report` and `dag` to allow resuming pipelines.