From 885f0ce5f69abafac3237728c929ba5b952eb593 Mon Sep 17 00:00:00 2001
From: Gisela Gabernet Garriga <gisela.gabernet@gmail.com>
Date: Mon, 9 Nov 2020 22:41:38 +0100
Subject: [PATCH 1/2] awsbatch config update

---
 conf/awsbatch.config | 14 +++++++++++++-
 docs/awsbatch.md     |  4 +++-
 2 files changed, 16 insertions(+), 2 deletions(-)

diff --git a/conf/awsbatch.config b/conf/awsbatch.config
index 2e5f83c..43f90db 100644
--- a/conf/awsbatch.config
+++ b/conf/awsbatch.config
@@ -7,7 +7,19 @@ params {
   awsqueue = false
   awsregion = 'eu-west-1'
   awscli = '/home/ec2-user/miniconda/bin/aws'
-  tracedir = './'
+}
+
+timeline {
+  overwrite = true
+}
+report {
+  overwrite = true
+}
+trace {
+  overwrite = true
+}
+dag {
+  overwrite = true
 }
 
 process.executor = 'awsbatch'
diff --git a/docs/awsbatch.md b/docs/awsbatch.md
index c00acef..daf425b 100644
--- a/docs/awsbatch.md
+++ b/docs/awsbatch.md
@@ -1,4 +1,6 @@
 # nf-core/configs: awsbatch Configuration
 
 To be used with `awsbatch`.
-Custom queue, region and CLI path can be supplied with `params.awsqueue`, `params.awsregion`, `params.awscli`, respectively.
+Custom queue and region can be supplied with `params.awsqueue`, `params.awsregion`, `params.awscli`, respectively.
+
+Allow `overwrite` of `trace`, `timeline`, `report` and `dag` to allow resuming pipelines.

From 9b5bcbd43436fd086d53790c73202343dbbc58bd Mon Sep 17 00:00:00 2001
From: ggabernet <gisela.gabernet@qbic.uni-tuebingen.de>
Date: Tue, 9 Feb 2021 22:06:59 +0100
Subject: [PATCH 2/2] update aws clipath

---
 conf/awsbatch.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/awsbatch.config b/conf/awsbatch.config
index 43f90db..a8b61b8 100644
--- a/conf/awsbatch.config
+++ b/conf/awsbatch.config
@@ -25,4 +25,4 @@ dag {
 process.executor = 'awsbatch'
 process.queue = params.awsqueue
 aws.region = params.awsregion
-executor.awscli = params.awscli
+aws.batch.cliPath = params.awscli