mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-21 16:16:04 +00:00
Added SHH specific EAGER configuration
This commit is contained in:
parent
0a3821ce78
commit
731372dac2
3 changed files with 47 additions and 0 deletions
17
conf/pipeline/eager/shh.config
Normal file
17
conf/pipeline/eager/shh.config
Normal file
|
@ -0,0 +1,17 @@
|
|||
// Profile config names for nf-core/configs
|
||||
|
||||
params {
|
||||
// Specific nf-core/configs params
|
||||
config_profile_contact = 'James Fellows Yates (@jfy133)'
|
||||
config_profile_description = 'nf-core/eager SHH profile provided by nf-core/configs'
|
||||
}
|
||||
|
||||
// Specific nf-core/eager process configuration
|
||||
process {
|
||||
withName: malt {
|
||||
memory = { check_max( 756.GB * task.attempt, 'memory' ) }
|
||||
cpus = { check_max(64 * task.attempt, 'cpus') }
|
||||
time = 1440.h
|
||||
queue = { task.memory > 756.GB ? 'supercruncher': 'long' }
|
||||
}
|
||||
}
|
17
docs/pipeline/eager/shh.md
Normal file
17
docs/pipeline/eager/shh.md
Normal file
|
@ -0,0 +1,17 @@
|
|||
# nf-core/configs: shh eager specific configuration
|
||||
|
||||
Extra specific configuration for eager pipeline
|
||||
|
||||
## Usage
|
||||
|
||||
To use, run the pipeline with `-profile shh`.
|
||||
|
||||
This will download and launch the eager specific [`shh.config`](../conf/pipeline/eager/shh.config) which has been pre-configured with a setup suitable for the shh cluster.
|
||||
|
||||
Example: `nextflow run nf-core/eager -profile shh`
|
||||
|
||||
## eager specific configurations for shh
|
||||
|
||||
Specific configurations for shh has been made for eager.
|
||||
|
||||
* Running with the MALT module turned on, will by default be sent either to long or supercruncher queues with a minimum of 756GB and 64 cores.
|
13
pipeline/eager.config
Normal file
13
pipeline/eager.config
Normal file
|
@ -0,0 +1,13 @@
|
|||
/*
|
||||
* -------------------------------------------------
|
||||
* nfcore/eager custom profile Nextflow config file
|
||||
* -------------------------------------------------
|
||||
* Config options for custom environments.
|
||||
* Cluster-specific config options should be saved
|
||||
* in the conf/pipeline/eager folder and imported
|
||||
* under a profile name here.
|
||||
*/
|
||||
|
||||
profiles {
|
||||
shh { includeConfig "${params.custom_config_base}/conf/pipeline/eager/shh.config" }
|
||||
}
|
Loading…
Reference in a new issue