Merge pull request #423 from marchoeppner/ccga_beegfs_update

Updating CCGA med to use the new Beegfs file system
2 years ago · 7556391c97
parent 57f63add02 e78d941105
commit 7556391c97
1 changed files with 3 additions and 3 deletions
--- a/conf/ccga_med.config
+++ b/conf/ccga_med.config
@ -13,8 +13,8 @@ params {

 singularity {
  enabled = true
-  runOptions = "-B /work_ifs -B /scratch"
-  cacheDir = "/work_ifs/ikmb_repository/singularity_cache/"
+  runOptions = "-B /work_ifs -B /scratch -B /work_beegfs"
+  cacheDir = "/work_beegfs/ikmb_repository/singularity_cache/"
 }

 executor {
@ -31,7 +31,7 @@ process {

 params {
  // illumina iGenomes reference file paths on RZCluster
-  igenomes_base = '/work_ifs/ikmb_repository/references/iGenomes/references/'
+  igenomes_base = '/work_beegfs/ikmb_repository/references/iGenomes/references/'
  saveReference = true
  max_memory = 250.GB
  max_cpus = 24