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Merge pull request #423 from marchoeppner/ccga_beegfs_update

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Updating CCGA med to use the new Beegfs file system
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Phil Ewels 2022-10-04 14:31:19 +02:00 committed by GitHub
commit 7556391c97
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1 changed files with 3 additions and 3 deletions
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conf/ccga_med.config
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@ -13,8 +13,8 @@ params {
singularity { singularity {
enabled = true enabled = true
runOptions = "-B /work_ifs -B /scratch" runOptions = "-B /work_ifs -B /scratch -B /work_beegfs"
cacheDir = "/work_ifs/ikmb_repository/singularity_cache/" cacheDir = "/work_beegfs/ikmb_repository/singularity_cache/"
} }
executor { executor {
@ -31,7 +31,7 @@ process {
params { params {
// illumina iGenomes reference file paths on RZCluster // illumina iGenomes reference file paths on RZCluster
igenomes_base = '/work_ifs/ikmb_repository/references/iGenomes/references/' igenomes_base = '/work_beegfs/ikmb_repository/references/iGenomes/references/'
saveReference = true saveReference = true
max_memory = 250.GB max_memory = 250.GB
max_cpus = 24 max_cpus = 24