millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-21 16:16:04 +00:00
Code Issues Releases Packages Activity

Merge pull request #423 from marchoeppner/ccga_beegfs_update

Browse source 
Updating CCGA med to use the new Beegfs file system
This commit is contained in:
Phil Ewels 2022-10-04 14:31:19 +02:00 committed by GitHub
commit 7556391c97
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 3 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/ccga_med.config
View file

@ -13,8 +13,8 @@ params {
singularity { singularity {
enabled = true enabled = true
runOptions = "-B /work_ifs -B /scratch" runOptions = "-B /work_ifs -B /scratch -B /work_beegfs"
cacheDir = "/work_ifs/ikmb_repository/singularity_cache/" cacheDir = "/work_beegfs/ikmb_repository/singularity_cache/"
} }
executor { executor {
@ -31,7 +31,7 @@ process {
params { params {
// illumina iGenomes reference file paths on RZCluster // illumina iGenomes reference file paths on RZCluster
igenomes_base = '/work_ifs/ikmb_repository/references/iGenomes/references/' igenomes_base = '/work_beegfs/ikmb_repository/references/iGenomes/references/'
saveReference = true saveReference = true
max_memory = 250.GB max_memory = 250.GB
max_cpus = 24 max_cpus = 24