From 789d211b18e7b7a02e29ba26af96a18c8e4c03a3 Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Fri, 11 Jan 2019 14:32:35 +0000 Subject: [PATCH] Update munin.md --- docs/munin.md | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/docs/munin.md b/docs/munin.md index bc617f7..bde7f2e 100644 --- a/docs/munin.md +++ b/docs/munin.md @@ -2,19 +2,19 @@ All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron. -To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download singularity image with all of the required software before execution of the pipeline. +To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download a singularity image with all of the required software before execution of the pipeline. Example: `nextflow run -profile munin` ## Docker -It is also possible to execute pipeline using Docker. +It is also possible to execute the pipeline using Docker. Example: `nextflow run -profile munin,docker` ## Below are non-mandatory information on iGenomes specific configuration -A local copy of the iGenomes resource has been made available on MUNIN cluster so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. +A local copy of the iGenomes resource has been made available on the MUNIN cluster so you should be able to run the pipeline against any reference available in the `igenomes.config` specific to the nf-core pipeline. You can do this by simply using the `--genome ` parameter. ->NB: You will need an account to use the munin cluster in order to run the pipeline. If in doubt contact @szilva. \ No newline at end of file +>NB: You will need an account to use the MUNIN cluster in order to run the pipeline. If in doubt contact @szilva.