added pipeline-specific config

conf/hasta.config

@@ -20,16 +20,7 @@ params {
 
 process {
     executor = 'slurm'
-    clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''}" }
-
-    withName:'PICARD_MARKDUPLICATES' {
-        cpus   = { check_max( 13      * task.attempt, 'cpus' ) }
-        memory = { check_max( 130.GB  * task.attempt, 'memory' ) }
-    }
-    withName:'DEEPVARIANT' {
-        cpus   = { check_max( 16      * task.attempt, 'cpus' ) }
-        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
-    }
+    clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''}" }    
 }
 
 profiles {

conf/pipeline/raredisease/hasta.config

@@ -0,0 +1,11 @@
+process {
+    
+    withName:'PICARD_MARKDUPLICATES' {
+        cpus   = { check_max( 13      * task.attempt, 'cpus' ) }
+        memory = { check_max( 130.GB  * task.attempt, 'memory' ) }
+    }
+    withName:'DEEPVARIANT' {
+        cpus   = { check_max( 16      * task.attempt, 'cpus' ) }
+        memory = { check_max( 80.GB   * task.attempt, 'memory' ) }
+    }
+}

pipeline/raredisease.config

@@ -0,0 +1,13 @@
+/*
+ * -------------------------------------------------
+ *  nfcore/raredisease custom profile Nextflow config file
+ * -------------------------------------------------
+ * Config options for custom environments.
+ * Cluster-specific config options should be saved
+ * in the conf/pipeline/raredisease folder and imported
+ * under a profile name here.
+ */
+
+profiles {
+  hasta { includeConfig "${params.custom_config_base}/conf/pipeline/raredisease/hasta.config" }  
+}