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add alternative module load

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qlr900 2022-07-06 12:42:14 +02:00
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docs/ku_sund_dangpu.md
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@ -13,6 +13,7 @@ Before running the pipeline you will need to load Nextflow and Singularity using
## Load Nextflow and Singularity environment modules ## Load Nextflow and Singularity environment modules
module purge module purge
module load openjdk/11.0.0 nextflow/22.04.3 singularity/3.8.0 module load openjdk/11.0.0 nextflow/22.04.3 singularity/3.8.0
# alternative module load jdk/1.8.0_291 nextflow/22.04.3 singularity/3.8.0
export NXF_OPTS='-Xms1g -Xmx4g' export NXF_OPTS='-Xms1g -Xmx4g'
export NXF_HOME=/projects/dan1/people/${USER}/cache/nxf-home export NXF_HOME=/projects/dan1/people/${USER}/cache/nxf-home
export NXF_TEMP=/scratch/tmp export NXF_TEMP=/scratch/tmp