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Adjust general usage to separate params section
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7 changed files with 50 additions and 91 deletions
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@ -1,11 +1,10 @@
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/*
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* -------------------------------------------------------------
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* Name: BINAC
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* Description: Configuration profile for BinAC clusters in Baden-Wuerttemberg/Germany.
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* Contact person: Alexander Peltzer (@apeltzer)
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* URL: https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC
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* -------------------------------------------------------------
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*/
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'BINAC'
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config_profile_description = 'BINAC Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'Alexander Peltzer (@apeltzer)'
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config_profile_url = 'https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC'
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}
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singularity {
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enabled = true
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@ -22,9 +21,4 @@ params {
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max_memory = 128.GB
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max_cpus = 28
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max_time = 48.h
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config_profile_name = 'BINAC'
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config_profile_description = 'BINAC Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'Alexander Peltzer (@apeltzer)'
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config_profile_url = 'https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC'
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}
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@ -1,11 +1,10 @@
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/*
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* -------------------------------------------------------------
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* Name: CFC
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* Description: Core Facility Cluster Profile provided by nf-core/configs.
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* Contact person: Alexander Peltzer (@apeltzer)
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* URL: http://qbic.uni-tuebingen.de/
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* -------------------------------------------------------------
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*/
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'CFC'
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config_profile_description = 'Core Facility Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'Alexander Peltzer (@apeltzer)'
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config_profile_url = 'http://qbic.uni-tuebingen.de/'
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}
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singularity {
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enabled = true
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@ -21,9 +20,4 @@ params {
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max_memory = 60.GB
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max_cpus = 24
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max_time = 140.h
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config_profile_name = 'CFC'
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config_profile_description = 'Core Facility Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'Alexander Peltzer (@apeltzer)'
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config_profile_url = 'http://qbic.uni-tuebingen.de/'
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}
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@ -3,6 +3,13 @@
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* Nextflow config file for CAMP HPC @ The Crick
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* -------------------------------------------------
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*/
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'CRICK'
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config_profile_description = 'CAMP HPC @ The Crick Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'Harshil Patel (@drpatelh )'
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config_profile_url = 'https://www.crick.ac.uk/research/platforms-and-facilities/scientific-computing/technologies'
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}
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singularity {
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enabled = true
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@ -1,19 +1,10 @@
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/*
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* -------------------------------------------------------------
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* Name: CFC
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* Description: MENDEL cluster profile provided by nf-core/configs
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* Contact person: Philipp H (@phue)
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* URL: http://www.gmi.oeaw.ac.at/
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* -------------------------------------------------------------
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*/
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/*
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* --------------------------------------------------------------------------------------
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* Nextflow config file for the MENDEL cluster at the Gregor Mendel Institute in Vienna
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* -------------------------------------------------------------------------------------
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*/
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phue
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'MENDEL'
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config_profile_description = 'MENDEL cluster profile provided by nf-core/configs'
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config_profile_contact = 'Philipp H (@phue)'
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config_profile_url = 'http://www.gmi.oeaw.ac.at/'
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}
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singularity {
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enabled = true
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@ -28,9 +19,4 @@ process {
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params {
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max_time = 192.h
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igenomesIgnore = true
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config_profile_name = 'MENDEL'
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config_profile_description = 'MENDEL cluster profile provided by nf-core/configs'
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config_profile_contact = 'Philipp H (@phue)'
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config_profile_url = 'http://www.gmi.oeaw.ac.at/'
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}
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@ -1,11 +1,10 @@
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/*
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* -------------------------------------------------------------
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* Name: PHOENIX
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* Description: Phoenix Research cluster profile provided by nf-core/configs
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* Contact person: Yassine Souilmi / Alexander Peltzer (@yassineS, @apeltzer)
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* URL: https://www.adelaide.edu.au/phoenix/
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* -------------------------------------------------------------
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*/
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'PHOENIX'
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config_profile_description = 'Phoenix Research cluster profile provided by nf-core/configs'
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config_profile_contact = 'Yassine Souilmi / Alexander Peltzer (@yassineS, @apeltzer)'
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config_profile_url = 'https://www.adelaide.edu.au/phoenix/'
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}
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singularity {
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enabled = true
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@ -22,9 +21,4 @@ params {
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max_memory = 128.GB
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max_cpus = 32
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max_time = 48.h
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config_profile_name = 'PHOENIX'
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config_profile_description = 'Phoenix Research cluster profile provided by nf-core/configs'
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config_profile_contact = 'Yassine Souilmi / Alexander Peltzer (@yassineS, @apeltzer)'
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config_profile_url = 'https://www.adelaide.edu.au/phoenix/'
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}
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@ -1,34 +1,23 @@
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/*
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* -------------------------------------------------------------
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* Name: SHH
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* Description: Configuration profile for MPI SHH Jena clusters.
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* Contact person: James Fellows Yates (@jfy133)
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* URL: https://shh.mpg.de
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* -------------------------------------------------------------
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*/
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//Profile config names for nf-core/configs
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params {
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config_profile_name = 'SHH'
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config_profile_description = 'MPI SHH Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_url = 'https://shh.mpg.de'
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}
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singularity {
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enabled = true
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cacheDir = "/projects1/users/$USER/nextflow/nf_cache/singularity/"
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}
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/*
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* To be improved by process specific resource requests
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* By default, take the medium queue, smaller processes might just go to short (e.g. multiqc or similar things)
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*/
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process {
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executor = 'slurm'
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queue = 'medium'
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}
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params {
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max_memory = 734.GB
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max_cpus = 64
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max_time = 48.h
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config_profile_name = 'SHH'
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config_profile_description = 'MPI SHH Cluster Profile provided by nf-core/configs.'
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config_profile_contact = 'James Fellows Yates (@jfy133)'
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config_profile_url = 'https://shh.mpg.de'
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}
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@ -1,11 +1,11 @@
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/*
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* -------------------------------------------------------------
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* Name: UZH
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* Description: UZH science cloud profile provided by nf-core/configs
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* Contact person: Judith Neukamm/Alexander Peltzer (@JudithNeukamm, @apeltzer)
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* URL: https://www.id.uzh.ch/en/scienceit/infrastructure/sciencecloud.html
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* -------------------------------------------------------------
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*/
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//Profile config names for nf-core/configs
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params{
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config_profile_name = 'UZH'
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config_profile_description = 'UZH science cloud profile provided by nf-core/configs'
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config_profile_contact = 'Judith Neukamm/Alexander Peltzer (@JudithNeukamm, @apeltzer)'
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config_profile_url = 'https://www.id.uzh.ch/en/scienceit/infrastructure/sciencecloud.html'
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}
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singularity {
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enabled = true
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}
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max_memory = 1800.GB
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max_cpus = 112
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max_time = 168.h
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config_profile_name = 'UZH'
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config_profile_description = 'UZH science cloud profile provided by nf-core/configs'
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config_profile_contact = 'Judith Neukamm/Alexander Peltzer (@JudithNeukamm, @apeltzer)'
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config_profile_url = 'https://www.id.uzh.ch/en/scienceit/infrastructure/sciencecloud.html'
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}
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