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Adjust general usage to separate params section

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This commit is contained in:
Alexander Peltzer 2019-01-04 14:55:22 +01:00
parent 9c97680d4c
commit 7af6b48b4d
7 changed files with 50 additions and 91 deletions
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20
conf/binac.config
View file

@ -1,11 +1,10 @@
/*
* -------------------------------------------------------------
* Name: BINAC
* Description: Configuration profile for BinAC clusters in Baden-Wuerttemberg/Germany.
* Contact person: Alexander Peltzer (@apeltzer)
* URL: https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC
* -------------------------------------------------------------
*/
//Profile config names for nf-core/configs
params {
config_profile_name = 'BINAC'
config_profile_description = 'BINAC Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC'
}
singularity {
enabled = true
@ -22,9 +21,4 @@ params {
max_memory = 128.GB
max_cpus = 28
max_time = 48.h
config_profile_name = 'BINAC'
config_profile_description = 'BINAC Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'https://www.bwhpc-c5.de/wiki/index.php/Category:BwForCluster_BinAC'
}

20
conf/cfc.config
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@ -1,11 +1,10 @@
/*
* -------------------------------------------------------------
* Name: CFC
* Description: Core Facility Cluster Profile provided by nf-core/configs.
* Contact person: Alexander Peltzer (@apeltzer)
* URL: http://qbic.uni-tuebingen.de/
* -------------------------------------------------------------
*/
//Profile config names for nf-core/configs
params {
config_profile_name = 'CFC'
config_profile_description = 'Core Facility Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'http://qbic.uni-tuebingen.de/'
}
singularity {
enabled = true
@ -21,9 +20,4 @@ params {
max_memory = 60.GB
max_cpus = 24
max_time = 140.h
config_profile_name = 'CFC'
config_profile_description = 'Core Facility Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Alexander Peltzer (@apeltzer)'
config_profile_url = 'http://qbic.uni-tuebingen.de/'
}

7
conf/crick.config
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@ -3,6 +3,13 @@
* Nextflow config file for CAMP HPC @ The Crick
* -------------------------------------------------
*/
//Profile config names for nf-core/configs
params {
config_profile_name = 'CRICK'
config_profile_description = 'CAMP HPC @ The Crick Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'Harshil Patel (@drpatelh )'
config_profile_url = 'https://www.crick.ac.uk/research/platforms-and-facilities/scientific-computing/technologies'
}
singularity {
enabled = true

28
conf/mendel.config
View file

@ -1,19 +1,10 @@
/*
* -------------------------------------------------------------
* Name: CFC
* Description: MENDEL cluster profile provided by nf-core/configs
* Contact person: Philipp H (@phue)
* URL: http://www.gmi.oeaw.ac.at/
* -------------------------------------------------------------
*/
/*
* --------------------------------------------------------------------------------------
* Nextflow config file for the MENDEL cluster at the Gregor Mendel Institute in Vienna
* -------------------------------------------------------------------------------------
*/
phue
//Profile config names for nf-core/configs
params {
config_profile_name = 'MENDEL'
config_profile_description = 'MENDEL cluster profile provided by nf-core/configs'
config_profile_contact = 'Philipp H (@phue)'
config_profile_url = 'http://www.gmi.oeaw.ac.at/'
}
singularity {
enabled = true
@ -28,9 +19,4 @@ process {
params {
max_time = 192.h
igenomesIgnore = true
config_profile_name = 'MENDEL'
config_profile_description = 'MENDEL cluster profile provided by nf-core/configs'
config_profile_contact = 'Philipp H (@phue)'
config_profile_url = 'http://www.gmi.oeaw.ac.at/'
}

20
conf/phoenix.config
View file

@ -1,11 +1,10 @@
/*
* -------------------------------------------------------------
* Name: PHOENIX
* Description: Phoenix Research cluster profile provided by nf-core/configs
* Contact person: Yassine Souilmi / Alexander Peltzer (@yassineS, @apeltzer)
* URL: https://www.adelaide.edu.au/phoenix/
* -------------------------------------------------------------
*/
//Profile config names for nf-core/configs
params {
config_profile_name = 'PHOENIX'
config_profile_description = 'Phoenix Research cluster profile provided by nf-core/configs'
config_profile_contact = 'Yassine Souilmi / Alexander Peltzer (@yassineS, @apeltzer)'
config_profile_url = 'https://www.adelaide.edu.au/phoenix/'
}
singularity {
enabled = true
@ -22,9 +21,4 @@ params {
max_memory = 128.GB
max_cpus = 32
max_time = 48.h
config_profile_name = 'PHOENIX'
config_profile_description = 'Phoenix Research cluster profile provided by nf-core/configs'
config_profile_contact = 'Yassine Souilmi / Alexander Peltzer (@yassineS, @apeltzer)'
config_profile_url = 'https://www.adelaide.edu.au/phoenix/'
}

25
conf/shh.config
View file

@ -1,34 +1,23 @@
/*
* -------------------------------------------------------------
* Name: SHH
* Description: Configuration profile for MPI SHH Jena clusters.
* Contact person: James Fellows Yates (@jfy133)
* URL: https://shh.mpg.de
* -------------------------------------------------------------
*/
//Profile config names for nf-core/configs
params {
config_profile_name = 'SHH'
config_profile_description = 'MPI SHH Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://shh.mpg.de'
}
singularity {
enabled = true
cacheDir = "/projects1/users/$USER/nextflow/nf_cache/singularity/"
}
/*
* To be improved by process specific resource requests
* By default, take the medium queue, smaller processes might just go to short (e.g. multiqc or similar things)
*/
process {
executor = 'slurm'
queue = 'medium'
}
params {
max_memory = 734.GB
max_cpus = 64
max_time = 48.h
config_profile_name = 'SHH'
config_profile_description = 'MPI SHH Cluster Profile provided by nf-core/configs.'
config_profile_contact = 'James Fellows Yates (@jfy133)'
config_profile_url = 'https://shh.mpg.de'
}

21
conf/uzh.config
View file

@ -1,11 +1,11 @@
/*
* -------------------------------------------------------------
* Name: UZH
* Description: UZH science cloud profile provided by nf-core/configs
* Contact person: Judith Neukamm/Alexander Peltzer (@JudithNeukamm, @apeltzer)
* URL: https://www.id.uzh.ch/en/scienceit/infrastructure/sciencecloud.html
* -------------------------------------------------------------
*/
//Profile config names for nf-core/configs
params{
config_profile_name = 'UZH'
config_profile_description = 'UZH science cloud profile provided by nf-core/configs'
config_profile_contact = 'Judith Neukamm/Alexander Peltzer (@JudithNeukamm, @apeltzer)'
config_profile_url = 'https://www.id.uzh.ch/en/scienceit/infrastructure/sciencecloud.html'
}
singularity {
enabled = true
}
@ -18,9 +18,4 @@ params {
max_memory = 1800.GB
max_cpus = 112
max_time = 168.h
config_profile_name = 'UZH'
config_profile_description = 'UZH science cloud profile provided by nf-core/configs'
config_profile_contact = 'Judith Neukamm/Alexander Peltzer (@JudithNeukamm, @apeltzer)'
config_profile_url = 'https://www.id.uzh.ch/en/scienceit/infrastructure/sciencecloud.html'
}