millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-12-31 03:32:10 -05:00
Code Issues Releases Packages Activity

Create sanger.config

Browse source
This commit is contained in:
Anthony Underwood 2021-04-21 16:39:55 +01:00 committed by GitHub
parent 7498e29ec0
commit 7d8770af1a
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 26 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

26
conf/sanger.config Normal file
View file

@ -0,0 +1,26 @@
params {
config_profile_description = 'The Wellcome Sanger Institute HPC cluster profile'
config_profile_contact = 'Anthony Underwood (@aunderwo)'
config_profile_url = 'https://www.sanger.ac.uk/group/informatics-support-group/'
}
singularity {
enabled = true
cacheDir = "${baseDir}/singularity"
runOptions = '--bind /lustre --bind /nfs/pathnfs01 --bind /nfs/pathnfs02 --bind /nfs/pathnfs03 --bind /nfs/pathnfs04 --bind /nfs/pathnfs05 --bind /nfs/pathnfs06 --no-home'
}
process{
executor = 'lsf'
queue = 'normal'
errorStrategy = { task.attempt <= 5 ? "retry" : "finish" }
process.maxRetries = 5
}
executor{
name = 'lsf'
perJobMemLimit = true
poolSize = 4
submitRateLimit = '5 sec'
killBatchSize = 50
}