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https://github.com/MillironX/nf-configs.git
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Updated resource requests for compatibility with general worker nodes
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commit
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4 changed files with 8 additions and 12 deletions
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@ -37,7 +37,7 @@ process {
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withLabel:process_high {
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cpus = { check_max( 8 * task.attempt, 'cpus' ) }
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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@ -37,7 +37,7 @@ process {
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withLabel:process_high {
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cpus = { check_max( 8 * task.attempt, 'cpus' ) }
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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@ -37,7 +37,7 @@ process {
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withLabel:process_high {
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cpus = { check_max( 8 * task.attempt, 'cpus' ) }
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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@ -45,10 +45,6 @@ process {
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time = { check_max( 12.h * task.attempt, 'time' ) }
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}
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withLabel:process_high_memory {
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memory = { check_max( 60.GB * task.attempt, 'memory' ) }
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}
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}
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@ -37,7 +37,7 @@ process {
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withLabel:process_high {
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cpus = { check_max( 8 * task.attempt, 'cpus' ) }
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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@ -46,7 +46,7 @@ process {
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}
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withLabel:process_high_memory {
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memory = { check_max( 60.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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}
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@ -54,7 +54,7 @@ process {
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withName:'BWAMEM1_MEM|BWAMEM2_MEM' {
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cpus = { check_max( 12 * task.attempt, 'cpus' ) }
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 8.GB * task.attempt, 'memory' ) }
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time = { check_max( 8.h * task.attempt, 'time' ) }
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}
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@ -71,11 +71,11 @@ process {
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}
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withName:'GATK4_APPLYBQSR|GATK4_APPLYBQSR_SPARK|GATK4_BASERECALIBRATOR|GATK4_GATHERBQSRREPORTS' {
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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}
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withName:'GATK4_MARKDUPLICATES' {
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memory = { check_max( 16.GB * task.attempt, 'memory' ) }
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memory = { check_max( 12.GB * task.attempt, 'memory' ) }
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}
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withName:'FREEBAYES|SAMTOOLS_STATS|SAMTOOLS_INDEX|UNZIP' {
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