diff --git a/conf/pipeline/eager/eva.config b/conf/pipeline/eager/eva.config index cf9a9ea..5f0eaae 100644 --- a/conf/pipeline/eager/eva.config +++ b/conf/pipeline/eager/eva.config @@ -472,4 +472,26 @@ profiles { bwaalnl = 16500 } } + 1240k { + params { + // Specific nf-core/configs params + config_profile_contact = 'Thiseas C. Lamnidis (@TCLamnidis)' + config_profile_description = 'nf-core/eager 1240k data EVA profile provided by nf-core/configs' + } + + executor { + queueSize = 6 + } + + process { + // Increasing walltime for bwa to avoid unnecessary retries + withName:bwa { + time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 72.h : 48.h } + } + + withName:markduplicates { + memory = { task.attempt == 3 ? 16.GB : task.attempt == 2 ? 8.GB : 4.GB } + } + } + } }