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Merge pull request #378 from raysloks/feat/hasta_java_memory_fix
Feat/hasta java memory fix
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commit
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2 changed files with 4 additions and 0 deletions
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@ -10,6 +10,7 @@ params {
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singularity {
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enabled = true
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envWhitelist = ['_JAVA_OPTIONS']
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}
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params {
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@ -7,4 +7,7 @@ process {
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cpus = { check_max( 16 * task.attempt, 'cpus' ) }
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memory = { check_max( 80.GB * task.attempt, 'memory' ) }
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}
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withName:'QUALIMAP_BAMQC' {
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ext.args = { "--java-mem-size=${task.memory.giga / 1.15 as long}G" }
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}
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}
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