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Merge pull request #378 from raysloks/feat/hasta_java_memory_fix

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Feat/hasta java memory fix
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Emil Bertilsson 2022-05-30 14:40:52 +02:00 committed by GitHub
commit 80e2a50a2f
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1
conf/hasta.config
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@ -10,6 +10,7 @@ params {
singularity { singularity {
enabled = true enabled = true
envWhitelist = ['_JAVA_OPTIONS']
} }
params { params {

3
conf/pipeline/raredisease/hasta.config
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@ -7,4 +7,7 @@ process {
cpus = { check_max( 16 * task.attempt, 'cpus' ) } cpus = { check_max( 16 * task.attempt, 'cpus' ) }
memory = { check_max( 80.GB * task.attempt, 'memory' ) } memory = { check_max( 80.GB * task.attempt, 'memory' ) }
} }
withName:'QUALIMAP_BAMQC' {
ext.args = { "--java-mem-size=${task.memory.giga / 1.15 as long}G" }
}
} }