From 81f910cc95d2f9eb2d93418c6e12ffc7b46539d4 Mon Sep 17 00:00:00 2001
From: MaxUlysse <max.u.garcia@gmail.com>
Date: Fri, 25 Sep 2020 09:49:43 +0200
Subject: [PATCH] add specific BamQC config

---
 conf/pipeline/sarek/uppmax.config | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/conf/pipeline/sarek/uppmax.config b/conf/pipeline/sarek/uppmax.config
index c5aa2b0..694515c 100644
--- a/conf/pipeline/sarek/uppmax.config
+++ b/conf/pipeline/sarek/uppmax.config
@@ -14,6 +14,13 @@ def hostname = "hostname".execute().text.trim()
 
 if (hostname ==~ "r.*") {
   params.single_cpu_mem = 6400.MB
+  process {
+    withName:BamQC {
+      cpus = {params.max_cpus}
+      memory = {params.max_memory}
+    }
+  }
+
 }
 
 if (hostname ==~ "i.*") {