millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 00:26:03 +00:00
Code Issues Releases Packages Activity

Update eva.config

Browse source
This commit is contained in:
James A. Fellows Yates 2022-02-04 09:31:33 +01:00 committed by GitHub
parent 86a9042eac
commit 81fe720b00
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
1 changed files with 3 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

3
conf/pipeline/eager/eva.config
View file

@ -87,6 +87,7 @@ process {
withName: markduplicates {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
memory = { check_max( 20.GB * task.attempt, 'memory' ) }
errorStrategy = { task.exitStatus in [1, 143,137, 140] ? 'retry' : 'finish' }
}
withName: library_merge {
@ -250,6 +251,7 @@ profiles {
withName: markduplicates {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
memory = { check_max( 32.GB * task.attempt, 'memory' ) }
errorStrategy = { task.exitStatus in [143,137, 140] ? 'retry' : 'finish' }
}
withName: library_merge {
@ -417,6 +419,7 @@ profiles {
withName: markduplicates {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
memory = { check_max( 48.GB * task.attempt, 'memory' ) }
errorStrategy = { task.exitStatus in [143,137, 140] ? 'retry' : 'finish' }
}
withName: library_merge {