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Update bind-paths
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1 changed files with 6 additions and 2 deletions
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@ -34,5 +34,9 @@ singularity {
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enabled = true
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autoMounts = true
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envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOBID'
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runOptions = ' -B /lscratch -B /fdb/igenomes/ --env TMPDIR="/lscratch/$SLURM_JOBID" '
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//As names change, the bind paths required may change too. To chack that everything is being captured:
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//Run '. /usr/local/current/singularity/app_conf/sing_binds' to populate $SINGULARITY_BINDPATH
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//Check that each folder in $SINGULARITY_BINDPATH is listed with -B in the runOptions below. If not, add it.
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runOptions = ' -B /gs10 -B /gs11 -B /gs12 -B /gs4 -B /gs6 -B /gs7 -B /gs8 -B /gs9 -B /vf -B /spin1 -B /data -B /fdb -B /lscratch -B /fdb/igenomes/ --env TMPDIR="/lscratch/$SLURM_JOBID" '
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}
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