From 962dca7a4661665c883037a8f43286b383ab984a Mon Sep 17 00:00:00 2001 From: Harshil Patel Date: Mon, 12 Jul 2021 12:24:49 +0100 Subject: [PATCH] Add ARTIC v1200 primers to genomes config for viralrecon --- conf/pipeline/viralrecon/genomes.config | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/conf/pipeline/viralrecon/genomes.config b/conf/pipeline/viralrecon/genomes.config index e7b1c2f..3e3e299 100644 --- a/conf/pipeline/viralrecon/genomes.config +++ b/conf/pipeline/viralrecon/genomes.config @@ -43,6 +43,12 @@ params { primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed' scheme = 'SARS-CoV-2' } + '1200' { + fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta' + gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz' + primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.bed' + scheme = 'nCoV-2019' + } } } }