millironx/nf-configs
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Clean up and alphabetasize

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drpatelh 2019-07-31 21:52:16 +01:00
parent 6298f78bf4
commit 840a97ed68
2 changed files with 10 additions and 8 deletions
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10
README.md
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@ -82,24 +82,26 @@ See [`nf-core/configs/docs`](https://github.com/nf-core/configs/tree/master/docs
Currently documentation is available for the following clusters: Currently documentation is available for the following clusters:
* [BINAC](docs/binac.md)
* [BIGPURPLE](docs/bigpurple.md) * [BIGPURPLE](docs/bigpurple.md)
* [BINAC](docs/binac.md)
* [CCGA](docs/ccga.md) * [CCGA](docs/ccga.md)
* [CCGA_DX](/docs/ccga_dx.md) * [CCGA_DX](/docs/ccga_dx.md)
* [CFC](docs/binac.md) * [CFC](docs/binac.md)
* [CRICK](docs/crick.md) * [CRICK](docs/crick.md)
* [CZBIOHUB_AWS](docs/czbiohub.md)
* [CZBIOHUB_AWS_HIGHPRIORITY](docs/czbiohub.md)
* [GIS](docs/gis.md) * [GIS](docs/gis.md)
* [HEBBE](docs/hebbe.md) * [HEBBE](docs/hebbe.md)
* [MENDEL](docs/mendel.md) * [MENDEL](docs/mendel.md)
* [MUNIN](docs/munin.md) * [MUNIN](docs/munin.md)
* [PASTEUR](docs/pasteur.md)
* [PHOENIX](docs/phoenix.md) * [PHOENIX](docs/phoenix.md)
* [PRINCE](docs/prince.md) * [PRINCE](docs/prince.md)
* [SHH](docs/shh.md) * [SHH](docs/shh.md)
* [UCT_HEX](docs/uct_hex.md) * [UCT_HEX](docs/uct_hex.md)
* [UPPMAX-DEVEL](docs/uppmax-devel.md)
* [UPPMAX](docs/uppmax.md) * [UPPMAX](docs/uppmax.md)
* [UPPMAX-DEVEL](docs/uppmax-devel.md)
* [UZH](docs/uzh.md) * [UZH](docs/uzh.md)
* [PASTEUR](docs/pasteur.md)
### Uploading to `nf-core/configs` ### Uploading to `nf-core/configs`
@ -111,4 +113,4 @@ We will be notified automatically when you have created your pull request, and p
## Help ## Help
If you have any questions or issues please send us a message on [Slack](https://nf-core-invite.herokuapp.com/). If you have any questions or issues please send us a message on [Slack](https://nf-co.re/join/slack).

8
nfcore_custom.config
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@ -12,6 +12,7 @@ params.custom_config_version = 'master'
params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}" params.custom_config_base = "https://raw.githubusercontent.com/nf-core/configs/${params.custom_config_version}"
profiles { profiles {
bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
binac { includeConfig "${params.custom_config_base}/conf/binac.config" } binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
ccga { includeConfig "${params.custom_config_base}/conf/ccga.config" } ccga { includeConfig "${params.custom_config_base}/conf/ccga.config" }
ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" } ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
@ -21,20 +22,19 @@ profiles {
czbiohub_aws_highpriority { czbiohub_aws_highpriority {
includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config"
includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config" includeConfig "${params.custom_config_base}/conf/czbiohub_aws_highpriority.config"
} }
gis { includeConfig "${params.custom_config_base}/conf/gis.config" } gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" } hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
mendel { includeConfig "${params.custom_config_base}/conf/mendel.config" } mendel { includeConfig "${params.custom_config_base}/conf/mendel.config" }
munin { includeConfig "${params.custom_config_base}/conf/munin.config" } munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" } phoenix { includeConfig "${params.custom_config_base}/conf/phoenix.config" }
prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
shh { includeConfig "${params.custom_config_base}/conf/shh.config" } shh { includeConfig "${params.custom_config_base}/conf/shh.config" }
uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" } uct_hex { includeConfig "${params.custom_config_base}/conf/uct_hex.config" }
uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"; includeConfig "${params.custom_config_base}/conf/uppmax-devel.config" } uppmax_devel { includeConfig "${params.custom_config_base}/conf/uppmax.config"; includeConfig "${params.custom_config_base}/conf/uppmax-devel.config" }
uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" } uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" }
uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" } uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
prince { includeConfig "${params.custom_config_base}/conf/prince.config" }
bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
pasteur { includeConfig "${params.custom_config_base}/conf/pasteur.config" }
} }
// If user hostnames contain one of these substring and they are // If user hostnames contain one of these substring and they are