From 84457cc6559f18d6664d346ca48a3b0306e82ccf Mon Sep 17 00:00:00 2001 From: Sarah Guinchard Date: Thu, 12 May 2022 11:01:36 +0200 Subject: [PATCH] Update documentation --- docs/ifb_core.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/docs/ifb_core.md b/docs/ifb_core.md index b9eb978..caf588a 100644 --- a/docs/ifb_core.md +++ b/docs/ifb_core.md @@ -6,7 +6,8 @@ To use, run the pipeline with `-profile ifb_core`. This will download and launch ## How to use on IFB core -Before running the pipeline you will need to load Nextflow using the environment module system on IFB core. You can do this by issuing the commands below: +Here is [the link to the cluster's documentation](https://ifb-elixirfr.gitlab.io/cluster/doc/quick-start/). +Before running the pipeline you will need to load Nextflow and other dependencies using the environment module system on IFB core. You can do this by issuing the commands below: ```bash # Login to a compute node @@ -14,7 +15,10 @@ srun --pty bash ## Load Nextflow and Singularity environment modules module purge -module load nextflow/20.04.1 +module load nextflow +module load singularity +module load openjdk + # Run a downloaded/git-cloned nextflow workflow from nextflow run \\