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Merge pull request #405 from drpatelh/monkeypox

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Replace NC_063383.1 fasta and gff and add Nextclade config
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Harshil Patel 2022-08-25 12:57:43 +01:00 committed by GitHub
commit 84b0b705a2
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1 changed files with 6 additions and 2 deletions
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8
conf/pipeline/viralrecon/genomes.config
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@ -73,8 +73,12 @@ params {
// Monkeypox
'NC_063383.1' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/GCA_014621545.1_ASM1462154v1_genomic.220824.fna.gz'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/GCA_014621545.1_ASM1462154v1_genomic.220824.gff.gz'
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/GCF_014621545.1_ASM1462154v1_genomic.220824.fna.gz'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/GCF_014621545.1_ASM1462154v1_genomic.220824.gff.gz'
nextclade_dataset = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/NC_063383.1/nextclade_hMPXV_NC_063383.1_2022-08-19T12_00_00Z.tar.gz'
nextclade_dataset_name = 'hMPXV'
nextclade_dataset_reference = 'NC_063383.1'
nextclade_dataset_tag = '2022-08-19T12:00:00Z'
}
// Monkeypox