mirror of
https://github.com/MillironX/nf-configs.git
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Merge branch 'master' into master
This commit is contained in:
commit
871b82f6f4
2 changed files with 15 additions and 13 deletions
3
.github/workflows/main.yml
vendored
3
.github/workflows/main.yml
vendored
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@ -18,12 +18,13 @@ jobs:
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matrix:
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matrix:
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profile:
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profile:
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- 'abims'
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- 'abims'
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- 'awsbatch'
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- 'aws_tower'
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- 'aws_tower'
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- 'awsbatch'
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- 'bi'
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- 'bi'
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- 'bigpurple'
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- 'bigpurple'
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- 'binac'
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- 'binac'
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- 'biohpc_gen'
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- 'biohpc_gen'
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- 'cambridge'
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- 'cbe'
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- 'cbe'
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- 'ccga_dx'
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- 'ccga_dx'
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- 'ccga_med'
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- 'ccga_med'
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@ -11,12 +11,13 @@
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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//Please use a new line per include Config section to allow easier linting/parsing. Thank you.
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profiles {
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profiles {
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abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
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abims { includeConfig "${params.custom_config_base}/conf/abims.config" }
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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aws_tower { includeConfig "${params.custom_config_base}/conf/aws_tower.config" }
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aws_tower { includeConfig "${params.custom_config_base}/conf/aws_tower.config" }
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awsbatch { includeConfig "${params.custom_config_base}/conf/awsbatch.config" }
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bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
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bi { includeConfig "${params.custom_config_base}/conf/bi.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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bigpurple { includeConfig "${params.custom_config_base}/conf/bigpurple.config" }
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binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
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binac { includeConfig "${params.custom_config_base}/conf/binac.config" }
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biohpc_gen { includeConfig "${params.custom_config_base}/conf/biohpc_gen.config" }
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biohpc_gen { includeConfig "${params.custom_config_base}/conf/biohpc_gen.config" }
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cambridge { includeConfig "${params.custom_config_base}/conf/cambridge.config" }
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cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" }
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cbe { includeConfig "${params.custom_config_base}/conf/cbe.config" }
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ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
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ccga_dx { includeConfig "${params.custom_config_base}/conf/ccga_dx.config" }
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ccga_med { includeConfig "${params.custom_config_base}/conf/ccga_med.config" }
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ccga_med { includeConfig "${params.custom_config_base}/conf/ccga_med.config" }
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@ -24,20 +25,21 @@ profiles {
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cfc_dev { includeConfig "${params.custom_config_base}/conf/cfc_dev.config" }
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cfc_dev { includeConfig "${params.custom_config_base}/conf/cfc_dev.config" }
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crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
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crick { includeConfig "${params.custom_config_base}/conf/crick.config" }
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czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
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czbiohub_aws { includeConfig "${params.custom_config_base}/conf/czbiohub_aws.config" }
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denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
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ebc { includeConfig "${params.custom_config_base}/conf/ebc.config" }
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ebc { includeConfig "${params.custom_config_base}/conf/ebc.config" }
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eddie { includeConfig "${params.custom_config_base}/conf/eddie.config" }
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eddie { includeConfig "${params.custom_config_base}/conf/eddie.config" }
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eva { includeConfig "${params.custom_config_base}/conf/eva.config" }
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eva { includeConfig "${params.custom_config_base}/conf/eva.config" }
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genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
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genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
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gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
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google { includeConfig "${params.custom_config_base}/conf/google.config" }
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hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
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icr_davros { includeConfig "${params.custom_config_base}/conf/icr_davros.config" }
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icr_davros { includeConfig "${params.custom_config_base}/conf/icr_davros.config" }
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ifb_core { includeConfig "${params.custom_config_base}/conf/ifb_core.config" }
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ifb_core { includeConfig "${params.custom_config_base}/conf/ifb_core.config" }
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imperial { includeConfig "${params.custom_config_base}/conf/imperial.config" }
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imperial { includeConfig "${params.custom_config_base}/conf/imperial.config" }
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imperial_mb { includeConfig "${params.custom_config_base}/conf/imperial_mb.config" }
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imperial_mb { includeConfig "${params.custom_config_base}/conf/imperial_mb.config" }
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genotoul { includeConfig "${params.custom_config_base}/conf/genotoul.config" }
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jax { includeConfig "${params.custom_config_base}/conf/jax.config" }
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google { includeConfig "${params.custom_config_base}/conf/google.config" }
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lugh { includeConfig "${params.custom_config_base}/conf/lugh.config" }
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denbi_qbic { includeConfig "${params.custom_config_base}/conf/denbi_qbic.config" }
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genouest { includeConfig "${params.custom_config_base}/conf/genouest.config" }
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gis { includeConfig "${params.custom_config_base}/conf/gis.config" }
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hebbe { includeConfig "${params.custom_config_base}/conf/hebbe.config" }
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lugh { includeConfig "${params.custom_config_base}/conf/lugh.config"}
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mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
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mpcdf { includeConfig "${params.custom_config_base}/conf/mpcdf.config" }
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munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
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munin { includeConfig "${params.custom_config_base}/conf/munin.config" }
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oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
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oist { includeConfig "${params.custom_config_base}/conf/oist.config" }
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@ -52,7 +54,6 @@ profiles {
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utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" }
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utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" }
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utd_sysbio { includeConfig "${params.custom_config_base}/conf/utd_sysbio.config" }
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utd_sysbio { includeConfig "${params.custom_config_base}/conf/utd_sysbio.config" }
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uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
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uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" }
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jax { includeConfig "${params.custom_config_base}/conf/jax.config" }
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}
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}
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// If user hostnames contain one of these substring and they are
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// If user hostnames contain one of these substring and they are
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@ -65,11 +66,11 @@ params {
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cbe: ['.cbe.vbc.ac.at'],
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cbe: ['.cbe.vbc.ac.at'],
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cfc: ['.hpc.uni-tuebingen.de'],
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cfc: ['.hpc.uni-tuebingen.de'],
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crick: ['.thecrick.org'],
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crick: ['.thecrick.org'],
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genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
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genouest: ['.genouest.org'],
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icr_davros: ['.davros.compute.estate'],
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icr_davros: ['.davros.compute.estate'],
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imperial: ['.hpc.ic.ac.uk'],
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imperial: ['.hpc.ic.ac.uk'],
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imperial_mb: ['.hpc.ic.ac.uk'],
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imperial_mb: ['.hpc.ic.ac.uk'],
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genotoul: ['.genologin1.toulouse.inra.fr', '.genologin2.toulouse.inra.fr'],
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genouest: ['.genouest.org'],
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uppmax: ['.uppmax.uu.se'],
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uppmax: ['.uppmax.uu.se'],
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utd_ganymede: ['ganymede.utdallas.edu'],
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utd_ganymede: ['ganymede.utdallas.edu'],
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utd_sysbio: ['sysbio.utdallas.edu']
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utd_sysbio: ['sysbio.utdallas.edu']
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