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Bump markduplicates by default

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James A. Fellows Yates 2022-02-02 08:00:13 +01:00 committed by GitHub
parent 9792226f5c
commit 8739aabbf0
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conf/pipeline/eager/eva.config
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@ -86,6 +86,7 @@ process {
withName: markduplicates { withName: markduplicates {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" }
memory = { check_max( 20.GB * task.attempt, 'memory' ) }
} }
withName: library_merge { withName: library_merge {
@ -247,6 +248,7 @@ profiles {
withName: markduplicates { withName: markduplicates {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" }
memory = { check_max( 32.GB * task.attempt, 'memory' ) }
} }
withName: library_merge { withName: library_merge {
@ -412,6 +414,7 @@ profiles {
withName: markduplicates { withName: markduplicates {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }
memory = { check_max( 48.GB * task.attempt, 'memory' ) }
} }
withName: library_merge { withName: library_merge {