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conf/nihbiowulf.config Normal file
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//Profile config names for nf-core/configs
params {
config_profile_description = 'National Institutes of Health, USA: Biowulf nf-core config'
config_profile_contact = 'Kevin Brick (@kevbrick)'
config_profile_url = 'https://hpc.nih.gov/apps/nextflow.html'
max_memory = 224.GB
max_cpus = 32
max_time = 72.h
igenomes_base = '/fdb/igenomes/'
}
process {
scratch = '/lscratch/$SLURM_JOBID'
maxForks = 100
}
profiles {
local {
process.executor = 'local'
}
slurm {
process.executor = 'slurm'
executor.$slurm.pollInterval = '1 min'
executor.$slurm.queueStatInterval = '5 min'
executor.queueSize = 100
executor.$slurm.submitRateLimit = '6/1min'
process.clusterOptions = ' --gres=lscratch:600 --signal USR2@20'
}
}
singularity {
enabled = true
autoMounts = true
envWhitelist='https_proxy,http_proxy,ftp_proxy,DISPLAY,SLURM_JOBID'
runOptions = ' -B /lscratch -B /fdb/igenomes/ --env TMPDIR="/lscratch/$SLURM_JOBID" '
}