diff --git a/conf/munin.config b/conf/munin.config index e0fab88..e31aa71 100644 --- a/conf/munin.config +++ b/conf/munin.config @@ -10,10 +10,15 @@ process { executor = 'local' } +sngularity { + enabled = true + autoMounts = true +} + params { saveReference = true - max_memory = 256.GB + max_memory = 128.GB max_cpus = 16 max_time = 72.h // illumina iGenomes reference file paths on UPPMAX diff --git a/docs/munin.md b/docs/munin.md index f0937a4..b03687d 100644 --- a/docs/munin.md +++ b/docs/munin.md @@ -2,28 +2,7 @@ All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron. -To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download either docker or singularity image with all of the required software before execution of the pipeline. - -## Running pipeline with Docker - ->NB: Make sure when running pipeline using docker to be in docker group - -```groovy -// https://github.com/nextflow-io/nextflow/issues/572 -docker { - mountFlags = 'z' - fixOwnership = true -} -``` - -## Running pipeline with Singularity - -```groovy -// https://github.com/nextflow-io/nextflow/issues/572 -singularity { - autoMounts = true -} -``` +To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download singularity image with all of the required software before execution of the pipeline. ## Below are non-mandatory information on iGenomes specific configuration