From 89dbb6c061aad948471101bee329167a60dd64d7 Mon Sep 17 00:00:00 2001
From: Martin Proks <mproksik@gmail.com>
Date: Fri, 11 Jan 2019 14:37:12 +0100
Subject: [PATCH] Setting Singularity as default method

---
 conf/munin.config |  7 ++++++-
 docs/munin.md     | 23 +----------------------
 2 files changed, 7 insertions(+), 23 deletions(-)

diff --git a/conf/munin.config b/conf/munin.config
index e0fab88..e31aa71 100644
--- a/conf/munin.config
+++ b/conf/munin.config
@@ -10,10 +10,15 @@ process {
   executor = 'local'
 }
 
+sngularity {
+  enabled = true
+  autoMounts = true
+}
+
 params {
   saveReference = true
 
-  max_memory = 256.GB
+  max_memory = 128.GB
   max_cpus = 16
   max_time = 72.h
   // illumina iGenomes reference file paths on UPPMAX
diff --git a/docs/munin.md b/docs/munin.md
index f0937a4..b03687d 100644
--- a/docs/munin.md
+++ b/docs/munin.md
@@ -2,28 +2,7 @@
 
 All nf-core pipelines have been successfully configured for use on the MUNIN cluster aka big iron.
 
-To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download either docker or singularity image with all of the required software before execution of the pipeline.
-
-## Running pipeline with Docker
-
->NB: Make sure when running pipeline using docker to be in docker group
-
-```groovy
-// https://github.com/nextflow-io/nextflow/issues/572
-docker {
-  mountFlags = 'z'
-  fixOwnership = true
-}
-```
-
-## Running pipeline with Singularity
-
-```groovy
-// https://github.com/nextflow-io/nextflow/issues/572
-singularity {
-  autoMounts = true
-}
-```
+To use, run the pipeline with `-profile munin`. This will download and launch the [`munin.config`](../conf/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster. Using this profile, Nextflow will download singularity image with all of the required software before execution of the pipeline.
 
 ## Below are non-mandatory information on iGenomes specific configuration