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Fixes hasta java memory issues

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Emil 2022-05-04 14:13:24 +02:00
parent a543a3ebc6
commit 8b9744723c
1 changed files with 8 additions and 0 deletions
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8
conf/hasta.config
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@ -21,6 +21,14 @@ params {
process { process {
executor = 'slurm' executor = 'slurm'
clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''}" } clusterOptions = { "-A $params.priority ${params.clusterOptions ?: ''}" }
withName: QUALIMAP_BAMQC {
memory = 64.GB
ext.args = "--java-mem-size=60G"
}
withName: 'PICARD_COLLECTHSMETRICS|PICARD_COLLECTMULTIPLEMETRICS|COLLECTREADCOUNTS|DENOISEREADCOUNTS' {
clusterOptions = { task.memory ? "-l h_vmem=${task.memory.bytes/task.cpus}+2" : null }
}
} }
profiles { profiles {