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Merge pull request #193 from emnilsson/master
Modified ampliseq-specific uppmax-config
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commit
8cc2fc5ecb
1 changed files with 11 additions and 6 deletions
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@ -1,15 +1,20 @@
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// Profile config names for nf-core/configs
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params {
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// Specific nf-core/configs params
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config_profile_contact = 'Daniel Lundin (daniel.lundin@lnu.se)'
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config_profile_description = 'nf-core/ampliseq UPPMAX profile provided by nf-core/configs'
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}
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withName: make_SILVA_132_16S_classifier {
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clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" }
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}
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process {
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withName: classifier_extract_seq {
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clusterOptions = { "-A $params.project -p core -n 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" }
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}
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withName: classifier {
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clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" }
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withName: classifier_train {
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clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 24:00:00 ${params.clusterOptions ?: ''}" }
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}
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withName: classifier {
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clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" }
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}
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}
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