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Merge pull request #193 from emnilsson/master

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Modified ampliseq-specific uppmax-config
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emnilsson 2020-12-02 13:40:43 +01:00 committed by GitHub
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1 changed files with 11 additions and 6 deletions
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conf/pipeline/ampliseq/uppmax.config
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@ -1,15 +1,20 @@
// Profile config names for nf-core/configs // Profile config names for nf-core/configs
params { params {
// Specific nf-core/configs params // Specific nf-core/configs params
config_profile_contact = 'Daniel Lundin (daniel.lundin@lnu.se)' config_profile_contact = 'Daniel Lundin (daniel.lundin@lnu.se)'
config_profile_description = 'nf-core/ampliseq UPPMAX profile provided by nf-core/configs' config_profile_description = 'nf-core/ampliseq UPPMAX profile provided by nf-core/configs'
} }
withName: make_SILVA_132_16S_classifier { process {
clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" } withName: classifier_extract_seq {
clusterOptions = { "-A $params.project -p core -n 1 -t 7-00:00:00 ${params.clusterOptions ?: ''}" }
}
withName: classifier_train {
clusterOptions = { "-A $params.project -C fat -p node -N 1 -t 24:00:00 ${params.clusterOptions ?: ''}" }
} }
withName: classifier { withName: classifier {
clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" } clusterOptions = { "-A $params.project -C fat -p node -N 1 ${params.clusterOptions ?: ''}" }
} }
}