From 8d5ae4c3ab53c8892bce378c58fb0e881c2e6cd0 Mon Sep 17 00:00:00 2001
From: Austyn Trull <atrull@uab.edu>
Date: Tue, 23 Aug 2022 15:30:13 -0500
Subject: [PATCH] Committing changes made by Brandon Wilk so that singularity
 containers will use scratch space

---
 conf/cheaha.config | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/conf/cheaha.config b/conf/cheaha.config
index 323a625..578259c 100644
--- a/conf/cheaha.config
+++ b/conf/cheaha.config
@@ -5,9 +5,15 @@ params {
     config_profile_url = 'https://www.uab.edu/cores/ircp/bds'
 }
 
+env {
+    TMPDIR="$USER_SCRATCH"
+    SINGULARITY_TMPDIR="$USER_SCRATCH"
+}
+
 singularity {
     enabled = true
     autoMounts = true
+    runOptions = "--contain --workdir $USER_SCRATCH"
 }
 
 process {