From e557e94bfb9058db0c8242779c77a03a80b22042 Mon Sep 17 00:00:00 2001
From: Mahesh Binzer-Panchal <mahesh.binzer-panchal@nbis.se>
Date: Thu, 7 Oct 2021 16:05:03 +0200
Subject: [PATCH] Add SNIC_TMP to config

---
 conf/uppmax.config | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/conf/uppmax.config b/conf/uppmax.config
index 3b518d4..df35835 100644
--- a/conf/uppmax.config
+++ b/conf/uppmax.config
@@ -10,11 +10,14 @@ params {
 
 singularity {
   enabled = true
+  envWhitelist = 'SNIC_TMP'
 }
 
 process {
   executor = 'slurm'
   clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
+  // Use node local storage for execution.
+  scratch = '$SNIC_TMP'
 }
 
 params {