From 9116a09afe277c90cb753e886df6beffad1f0e79 Mon Sep 17 00:00:00 2001 From: theoportlock Date: Fri, 17 Sep 2021 11:48:22 +0200 Subject: [PATCH] Fixes formatting and ignore_params --- conf/rosalind.config | 29 +++++++++++++++-------------- 1 file changed, 15 insertions(+), 14 deletions(-) diff --git a/conf/rosalind.config b/conf/rosalind.config index 8173633..070cf11 100644 --- a/conf/rosalind.config +++ b/conf/rosalind.config @@ -1,28 +1,29 @@ params { - config_profile_description = 'Kings College London Rosalind HPC' - config_profile_contact = 'Theo Portlock' - config_profile_url = 'https://rosalind.kcl.ac.uk/' + config_profile_description = 'Kings College London Rosalind HPC' + config_profile_contact = 'Theo Portlock' + config_profile_url = 'https://www.rosalind.kcl.ac.uk/' } singularity { - enabled = true - autoMounts = true - docker.enabled = false + enabled = true + autoMounts = true + docker.enabled = false } params { - max_memory = 64.GB - max_cpus = 16 - max_time = 24.h - partition = 'shared' + max_memory = 64.GB + max_cpus = 16 + max_time = 24.h + partition = 'shared' + schema_ignore_params = 'partition' } process { - executor = 'slurm' - maxRetries = 3 - clusterOptions = { "--partition=$params.partition" } + executor = 'slurm' + maxRetries = 3 + clusterOptions = { "--partition=$params.partition" } } executor { - submitRateLimit = '1 sec' + submitRateLimit = '1 sec' }