millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-22 08:29:54 +00:00
Code Issues Releases Packages Activity

Merge pull request #328 from jfy133/eva-update

Browse source 
eager @ EVA walltime whole year
This commit is contained in:
James A. Fellows Yates 2022-02-10 17:23:04 +01:00 committed by GitHub
commit 92424ee2c3
No known key found for this signature in database
GPG key ID: 4AEE18F83AFDEB23
2 changed files with 8 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

2
conf/eva.config
View file

@ -30,7 +30,7 @@ profiles {
config_profile_description = 'MPI-EVA archgen profile, provided by nf-core/configs.'
max_memory = 256.GB
max_cpus = 32
max_time = 720.h
max_time = 365.d
//Illumina iGenomes reference file path
}

7
conf/pipeline/eager/eva.config
View file

@ -19,36 +19,43 @@ process {
withLabel:'sc_tiny'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 1.GB * task.attempt, 'memory' ) }
time = '365.d'
}
withLabel:'sc_small'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = '365.d'
}
withLabel:'sc_medium'{
cpus = { check_max( 1, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = '365.d'
}
withLabel:'mc_small'{
cpus = { check_max( 2, 'cpus' ) }
memory = { check_max( 4.GB * task.attempt, 'memory' ) }
time = '365.d'
}
withLabel:'mc_medium' {
cpus = { check_max( 4, 'cpus' ) }
memory = { check_max( 8.GB * task.attempt, 'memory' ) }
time = '365.d'
}
withLabel:'mc_large'{
cpus = { check_max( 8, 'cpus' ) }
memory = { check_max( 16.GB * task.attempt, 'memory' ) }
time = '365.d'
}
withLabel:'mc_huge'{
cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 256.GB * task.attempt, 'memory' ) }
time = '365.d'
}
// Fixes for SGE and Java incompatibility due to Java using more memory than you tell it to use