From 926c14f7ee0368869214671d595179c9777635d1 Mon Sep 17 00:00:00 2001
From: jfy133 <jfy133@gmail.com>
Date: Wed, 8 Jul 2020 09:36:56 +0200
Subject: [PATCH] Cleverer process time submission

---
 conf/pipeline/eager/shh.config | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/conf/pipeline/eager/shh.config b/conf/pipeline/eager/shh.config
index 718242c..560dee5 100644
--- a/conf/pipeline/eager/shh.config
+++ b/conf/pipeline/eager/shh.config
@@ -10,11 +10,11 @@ params {
 // Specific nf-core/eager process configuration
 process {
 
-  maxRetries = 5
+  maxRetries = 2
 
   withName: malt {
     maxRetries = 1
-    memory = {  task.attempt > 1 ? 1900.GB : 725.GB }
+    memory = { task.attempt > 1 ? 1900.GB : 725.GB }
     cpus = { task.attempt > 1 ? 112 : 64 }
     time = 1440.h
     queue = { task.memory > 756.GB ? 'supercruncher' : 'long' }
@@ -23,43 +23,43 @@ process {
   withLabel:'sc_tiny'{
     cpus = { check_max( 1, 'cpus' ) }
     memory = { check_max( 1.GB * task.attempt, 'memory' ) }
-    time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+    time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
   }
 
   withLabel:'sc_small'{
     cpus = { check_max( 1, 'cpus' ) }
     memory = { check_max( 4.GB * task.attempt, 'memory' ) }
-    time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+    time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
   }
 
   withLabel:'sc_medium'{
     cpus = { check_max( 1, 'cpus' ) }
     memory = { check_max( 8.GB * task.attempt, 'memory' ) }
-    time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+    time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
   }
 
   withLabel:'mc_small'{
     cpus = { check_max( 2, 'cpus' ) }
     memory = { check_max( 4.GB * task.attempt, 'memory' ) }
-    time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+    time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
   }
 
   withLabel:'mc_medium' {
     cpus = { check_max( 4, 'cpus' ) }
     memory = { check_max( 8.GB * task.attempt, 'memory' ) }
-    time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+    time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
   }
 
   withLabel:'mc_large'{
      cpus = { check_max( 8, 'cpus' ) }
      memory = { check_max( 16.GB * task.attempt, 'memory' ) }
-     time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+     time = { task.attempt == 3 ? 1440.h : task.attempt == 2 ? 48.h : 1.h }
   }
 
   withLabel:'mc_huge'{
      cpus = { check_max( 32, 'cpus' ) }
      memory = { check_max( 256.GB * task.attempt, 'memory' ) }
-     time = { check_max( task.attempt == 3 ? 120.h : task.attempt == 2 ? 48.h : task.attempt == 1 ? 24.h : 1.h,  'time' ) }
+     time = { task.attempt == 3 ? 1449.h : task.attempt == 2 ? 48.h : 1.h }
    }
   
 }
@@ -99,7 +99,7 @@ profiles {
       maltextract_matches = false
       maltextract_megansummary = false
       maltextract_percentidentity = 90.0
-      maltextract_topalignment =  false
+      maltextract_topalignment = false
       maltextract_singlestranded = false
     }
   }