millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-24 17:19:54 +00:00
Code Issues Releases Packages Activity

update checker script

Browse source
This commit is contained in:
ggabernet 2021-07-03 14:52:44 +02:00
parent 79fffbd77f
commit 926f3ba24f
1 changed files with 11 additions and 7 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

16
bin/cchecker.py
View file

@ -10,6 +10,7 @@ import os
import sys
import argparse
import re
import yaml
############################################
############################################
@ -51,13 +52,16 @@ def check_config(Config, Github):
### Ignore these profiles
ignore_me = ['czbiohub_aws']
tests.update(ignore_me)
# parse yaml GitHub actions file
try:
with open(Github, 'r') as ghfile:
for line in ghfile:
if re.search('profile: ', line):
line = line.replace('\'','').replace('[','').replace(']','').replace('\n','')
profiles = line.split(':')[1].split(',')
for p in profiles:
tests.add(p.strip())
wf = yaml.safe_load(ghfile)
profile_list = wf["profile_test"]["strategy"]["matrix"]["profile"]
except Exception as e:
return {"failed": ["Could not parse yaml file: {}, {}".format(Github, e)]}
# Add profiles to test
for profile in profile_list:
tests.add(profile.strip())
###Check if sets are equal
if tests == config_profiles: