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Merge pull request #253 from jfy133/eva

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eager@EVA fixes more SGE + java silliness
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James A. Fellows Yates 2021-06-29 12:53:34 +02:00 committed by GitHub
commit 9298b353f5
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1 changed files with 2 additions and 2 deletions
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conf/pipeline/eager/eva.config
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@ -69,7 +69,7 @@ process {
} }
withName: adapter_removal { withName: adapter_removal {
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" } clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 4)}G,virtual_free=${(task.memory.toGiga() * 4)}G" }
} }
withName: dedup { withName: dedup {
@ -97,7 +97,7 @@ process {
} }
withName: mtnucratio { withName: mtnucratio {
clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" } clusterOptions = { "-S /bin/bash -l h_vmem=${(task.memory.toGiga() * 4)}G,virtual_free=${(task.memory.toGiga() * 4)}G" }
} }
withName: vcf2genome { withName: vcf2genome {