From 5c609859c53486bf6e2fa84d05111b78cf3b60df Mon Sep 17 00:00:00 2001 From: phue Date: Tue, 4 Dec 2018 16:58:33 +0100 Subject: [PATCH] add config for MENDEL cluster --- conf/mendel.config | 20 ++++++++++++++++++++ nfcore_custom.config | 1 + 2 files changed, 21 insertions(+) create mode 100644 conf/mendel.config diff --git a/conf/mendel.config b/conf/mendel.config new file mode 100644 index 0000000..cf0d539 --- /dev/null +++ b/conf/mendel.config @@ -0,0 +1,20 @@ +/* + * -------------------------------------------------------------------------------------- + * Nextflow config file for the MENDEL cluster at the Gregor Mendel Institute in Vienna + * ------------------------------------------------------------------------------------- + */ + +singularity { + enabled = true +} + +process { + beforeScript = 'module load Singularity' + executor = 'pbs' + clusterOptions = { "-P $params.project" } +} + +params { + max_time = 192.h + igenomesIgnore = true +} diff --git a/nfcore_custom.config b/nfcore_custom.config index 13d93c2..f69a793 100644 --- a/nfcore_custom.config +++ b/nfcore_custom.config @@ -17,6 +17,7 @@ profiles { crick { includeConfig "${config_base}/crick.config" } gis { includeConfig "${config_base}/gis.config" } hebbe { includeConfig "${config_base}/hebbe.config" } + mendel { includeConfig "${config_base}/mendel.config" } phoenix { includeConfig "${config_base}/pheonix.config" } uct_hex { includeConfig "${config_base}/uct_hex.config" } uppmax_devel { includeConfig "${config_base}/uppmax.config"