From 93bde78faad71fbb97795b9fdbae1af79baa8f30 Mon Sep 17 00:00:00 2001 From: Asaf Peer Date: Sun, 21 Mar 2021 06:47:52 -0400 Subject: [PATCH] added JAX conf --- .github/workflows/main.yml | 2 +- README.md | 1 + nfcore_custom.config | 1 + 3 files changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index cf00bea..41601d4 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -16,7 +16,7 @@ jobs: needs: test_all_profiles strategy: matrix: - profile: ['abims', 'awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'ifb_core', 'imperial', 'imperial_mb', 'kraken', 'mpcdf', 'munin', 'oist', 'pasteur', 'phoenix', 'prince', 'seg_globe', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh'] + profile: ['abims', 'awsbatch', 'bi','bigpurple', 'binac', 'cbe', 'ccga_dx', 'ccga_med', 'cfc', 'cfc_dev', 'crick', 'denbi_qbic', 'ebc', 'genotoul', 'genouest', 'gis', 'google', 'hebbe', 'icr_davros', 'ifb_core', 'imperial', 'imperial_mb', 'jax', 'kraken', 'mpcdf', 'munin', 'oist', 'pasteur', 'phoenix', 'prince', 'seg_globe', 'shh', 'uct_hpc', 'uppmax', 'utd_ganymede', 'uzh'] steps: - uses: actions/checkout@v1 - name: Install Nextflow diff --git a/README.md b/README.md index 45721e8..5616780 100644 --- a/README.md +++ b/README.md @@ -113,6 +113,7 @@ Currently documentation is available for the following systems: * [GOOGLE](docs/google.md) * [HEBBE](docs/hebbe.md) * [ICR_DAVROS](docs/icr_davros.md) +* [JAX](docs/jax.md) * [KRAKEN](docs/kraken.md) * [MPCDF](docs/mpcdf.md) * [MUNIN](docs/munin.md) diff --git a/nfcore_custom.config b/nfcore_custom.config index a4c9939..3cafe07 100644 --- a/nfcore_custom.config +++ b/nfcore_custom.config @@ -46,6 +46,7 @@ profiles { uppmax { includeConfig "${params.custom_config_base}/conf/uppmax.config" } utd_ganymede { includeConfig "${params.custom_config_base}/conf/utd_ganymede.config" } uzh { includeConfig "${params.custom_config_base}/conf/uzh.config" } + jax { includeConfig "${params.custom_config_base}/conf/jax.config" } } // If user hostnames contain one of these substring and they are