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Update eva.config

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James A. Fellows Yates 2021-08-30 13:29:44 +02:00 committed by GitHub
parent 5fbd938bc1
commit 94cbb031c6
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1 changed files with 11 additions and 5 deletions
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16
conf/pipeline/eager/eva.config
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@ -85,7 +85,9 @@ process {
} }
withName: malt { withName: malt {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 2)}G,virtual_free=${(task.memory.toGiga() * 2)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 955.GB * task.attempt, 'memory' ) }
} }
withName: maltextract { withName: maltextract {
@ -223,8 +225,10 @@ profiles {
} }
withName: malt { withName: malt {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 3)}G,virtual_free=${(task.memory.toGiga() * 3)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
} cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 955.GB * task.attempt, 'memory' ) }
}
withName:hostremoval_input_fastq { withName:hostremoval_input_fastq {
cpus = { check_max( 1, 'cpus' ) } cpus = { check_max( 1, 'cpus' ) }
@ -372,8 +376,10 @@ profiles {
} }
withName: malt { withName: malt {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=1000G,virtual_free=1000G" }
} cpus = { check_max( 32, 'cpus' ) }
memory = { check_max( 955.GB * task.attempt, 'memory' ) }
}
withName: maltextract { withName: maltextract {
clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" } clusterOptions = { "-S /bin/bash -V -l h_vmem=${(task.memory.toGiga() * 6)}G,virtual_free=${(task.memory.toGiga() * 6)}G" }