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Update docs/uzh.md

Co-Authored-By: apeltzer <apeltzer@users.noreply.github.com>
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Phil Ewels 2019-01-07 12:10:41 +01:00 committed by GitHub
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@ -4,7 +4,6 @@ All nf-core pipelines have been successfully configured for use on the UZH clust
To use, run the pipeline with `-profile uzh`. This will download and launch the [`uzh.config`](../conf/uzh.config) which has been pre-configured with a setup suitable for the UZH cluster. Using this profile, Nextflow will download a singularity image with all of the required software before execution of the pipeline. To use, run the pipeline with `-profile uzh`. This will download and launch the [`uzh.config`](../conf/uzh.config) which has been pre-configured with a setup suitable for the UZH cluster. Using this profile, Nextflow will download a singularity image with all of the required software before execution of the pipeline.
All of the intermediate files required to run the pipeline will be stored in the `work/` directory. It is recommended to delete this directory after the pipeline has finished successfully because it can get quite large, and all of the main output files will be saved in the `results/` directory anyway.
>NB: You will need an account to use the HPC cluster UZH in order to run the pipeline. If in doubt contact IT. >NB: You will need an account to use the HPC cluster UZH in order to run the pipeline. If in doubt contact IT.