millironx/nf-configs
1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-21 16:16:04 +00:00
Code Issues Releases Packages Activity

Add ARTIC v1200 primers to genomes config for viralrecon

Browse source
This commit is contained in:
Harshil Patel 2021-07-12 12:24:49 +01:00
parent 435955ab20
commit 962dca7a46
1 changed files with 6 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

6
conf/pipeline/viralrecon/genomes.config
View file

@ -43,6 +43,12 @@ params {
primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed'
scheme = 'SARS-CoV-2'
}
'1200' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.bed'
scheme = 'nCoV-2019'
}
}
}
}