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Add ARTIC v1200 primers to genomes config for viralrecon

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Harshil Patel 2021-07-12 12:24:49 +01:00
parent 435955ab20
commit 962dca7a46
1 changed files with 6 additions and 0 deletions
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6
conf/pipeline/viralrecon/genomes.config
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@ -43,6 +43,12 @@ params {
primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed' primer_bed = 'https://github.com/artic-network/artic-ncov2019/raw/master/primer_schemes/nCoV-2019/V4/SARS-CoV-2.scheme.bed'
scheme = 'SARS-CoV-2' scheme = 'SARS-CoV-2'
} }
'1200' {
fasta = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.reference.fasta'
gff = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/GCA_009858895.3_ASM985889v3_genomic.200409.gff.gz'
primer_bed = 'https://github.com/nf-core/test-datasets/raw/viralrecon/genome/MN908947.3/primer_schemes/artic/nCoV-2019/V1200/nCoV-2019.bed'
scheme = 'nCoV-2019'
}
} }
} }
} }