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Add SHH Configuration

This commit is contained in:
Alexander Peltzer 2019-01-03 16:01:06 +01:00
parent 3d1ceab2e7
commit 98fca8a1ef

38
conf/shh.config Normal file
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/*
* -------------------------------------------------------------
* Nextflow config file for use with Singularity at SHH Clusters
* -------------------------------------------------------------
* Defines basic usage limits and singularity image id.
*/
singularity {
enabled = true
cacheDir = "/projects1/users/$USER/nextflow/nf_cache/singularity/"
}
/*
* To be improved by process specific resource requests
* By default, take the medium queue, smaller processes might just go to short (e.g. multiqc or similar things)
*/
process {
executor = 'slurm'
queue = 'medium'
withName:makeFastaIndex {
queue = 'short'
time = 2.h
}
withName:makeSeqDict {
queue = 'short'
time = 2.h
}
}
params {
max_memory = 734.GB
max_cpus = 64
max_time = 48.h
}