Add SHH Configuration

conf/shh.config

@@ -0,0 +1,38 @@
+/*
+ * -------------------------------------------------------------
+ *  Nextflow config file for use with Singularity at SHH Clusters
+ * -------------------------------------------------------------
+ * Defines basic usage limits and singularity image id.
+ */
+
+singularity {
+    enabled = true
+    cacheDir = "/projects1/users/$USER/nextflow/nf_cache/singularity/"
+}
+
+/*
+* To be improved by process specific resource requests
+* By default, take the medium queue, smaller processes might just go to short (e.g. multiqc or similar things)
+*/
+
+process {
+    executor = 'slurm'
+    queue = 'medium'
+
+    
+    withName:makeFastaIndex {
+        queue = 'short'
+        time = 2.h
+    }
+    withName:makeSeqDict {
+        queue = 'short'
+        time = 2.h
+    }
+}
+
+
+params {
+  max_memory = 734.GB
+  max_cpus = 64
+  max_time = 48.h
+}